PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G087100.1
Common NameB456_006G087100, LOC105798972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 190aa    MW: 21993 Da    PI: 8.1975
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G087100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23.1e-34261242103
                         HHHHHHHHHCTG......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
        HSF_DNA-bind   2 Flkklyeilede......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                         Fl k+y +le++      e+k+++sw+++gn f+v+ +++f++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F
  Gorai.006G087100.1  26 FLLKTYALLEEAeeggggEYKKIVSWNDEGNGFIVWSPTDFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKHEKF 107
                         9*********77777888****************************************************9998.........******** PP

                         XXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  87 kkgkkellekikrkkse 103
                         k+g k++l +i rkk+e
  Gorai.006G087100.1 108 KRGYKHMLVEITRKKTE 124
                         **************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3518116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-4322121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-2723121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-2826121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-97082IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-98395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MELELEDPNY QNNKSKSLVT KGTAPFLLKT YALLEEAEEG GGGEYKKIVS WNDEGNGFIV  60
WSPTDFSDLT LPRYFKHNNF SSFIRQLNTY GFKKTSSKRW EFKHEKFKRG YKHMLVEITR  120
KKTEATTAFL KSNCGDEDNM MMKNGNQQTL MEENENLRKE KVELETQIAQ FKALEIKLLD  180
CIAQHMGPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B8e-17231211104Putative transcription factor
5d5x_B8e-17231211104Putative transcription factor
5d5x_E8e-17231211104Putative transcription factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486180.0KJ748618.1 Gossypium hirsutum HSF15 (HSF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484710.11e-140PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A0D2NNW21e-140A0A0D2NNW2_G
STRINGPOPTR_0004s04260.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16597712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-36heat shock transcription factor B2A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]